plot_cco {marginaleffects}R Documentation

plot_comparisons() is an alias to plot_comparisons()

Description

This alias is kept for backward compatibility.

Usage

plot_cco(
  model,
  variables = NULL,
  condition = NULL,
  by = NULL,
  newdata = NULL,
  type = "response",
  vcov = NULL,
  conf_level = 0.95,
  comparison = "difference",
  transform = NULL,
  rug = FALSE,
  gray = FALSE,
  draw = TRUE,
  ...
)

Arguments

model

Model object

condition

Conditional predictions

  • Character vector (max length 3): Names of the predictors to display.

  • Named list (max length 3): List names correspond to predictors. List elements can be:

    • Numeric vector

    • Function which returns a numeric vector or a set of unique categorical values

    • Shortcut strings for common reference values: "minmax", "quartile", "threenum"

  • 1: x-axis. 2: color/shape. 3: facets.

  • Numeric variables in positions 2 and 3 are summarized by Tukey's five numbers ?stats::fivenum

by

Marginal predictions

  • Character vector (max length 3): Names of the categorical predictors to marginalize across.

  • 1: x-axis. 2: color. 3: facets.

newdata

Grid of predictor values at which we evaluate the slopes.

  • NULL (default): Unit-level slopes for each observed value in the original dataset.

  • data frame: Unit-level slopes for each row of the newdata data frame.

  • datagrid() call to specify a custom grid of regressors. For example:

    • newdata = datagrid(cyl = c(4, 6)): cyl variable equal to 4 and 6 and other regressors fixed at their means or modes.

    • See the Examples section and the datagrid() documentation.

  • string:

    • "mean": Marginal Effects at the Mean. Slopes when each predictor is held at its mean or mode.

    • "median": Marginal Effects at the Median. Slopes when each predictor is held at its median or mode.

    • "marginalmeans": Marginal Effects at Marginal Means. See Details section below.

    • "tukey": Marginal Effects at Tukey's 5 numbers.

    • "grid": Marginal Effects on a grid of representative numbers (Tukey's 5 numbers and unique values of categorical predictors).

type

string indicates the type (scale) of the predictions used to compute contrasts or slopes. This can differ based on the model type, but will typically be a string such as: "response", "link", "probs", or "zero". When an unsupported string is entered, the model-specific list of acceptable values is returned in an error message. When type is NULL, the default value is used. This default is the first model-related row in the marginaleffects:::type_dictionary dataframe.

vcov

Type of uncertainty estimates to report (e.g., for robust standard errors). Acceptable values:

  • FALSE: Do not compute standard errors. This can speed up computation considerably.

  • TRUE: Unit-level standard errors using the default vcov(model) variance-covariance matrix.

  • String which indicates the kind of uncertainty estimates to return.

    • Heteroskedasticity-consistent: "HC", "HC0", "HC1", "HC2", "HC3", "HC4", "HC4m", "HC5". See ?sandwich::vcovHC

    • Heteroskedasticity and autocorrelation consistent: "HAC"

    • Mixed-Models degrees of freedom: "satterthwaite", "kenward-roger"

    • Other: "NeweyWest", "KernHAC", "OPG". See the sandwich package documentation.

  • One-sided formula which indicates the name of cluster variables (e.g., ~unit_id). This formula is passed to the cluster argument of the sandwich::vcovCL function.

  • Square covariance matrix

  • Function which returns a covariance matrix (e.g., stats::vcov(model))

conf_level

numeric value between 0 and 1. Confidence level to use to build a confidence interval.

transform

A function applied to unit-level adjusted predictions and confidence intervals just before the function returns results. For bayesian models, this function is applied to individual draws from the posterior distribution, before computing summaries.

rug

TRUE displays tick marks on the axes to mark the distribution of raw data.

gray

FALSE grayscale or color plot

draw

TRUE returns a ggplot2 plot. FALSE returns a data.frame of the underlying data.

...

Additional arguments are passed to the predict() method supplied by the modeling package.These arguments are particularly useful for mixed-effects or bayesian models (see the online vignettes on the marginaleffects website). Available arguments can vary from model to model, depending on the range of supported arguments by each modeling package. See the "Model-Specific Arguments" section of the ?marginaleffects documentation for a non-exhaustive list of available arguments.

Value

A ggplot2 object or data frame (if draw=FALSE)

Model-Specific Arguments

Some model types allow model-specific arguments to modify the nature of marginal effects, predictions, marginal means, and contrasts. Please report other package-specific predict() arguments on Github so we can add them to the table below.

https://github.com/vincentarelbundock/marginaleffects/issues

Package Class Argument Documentation
brms brmsfit ndraws brms::posterior_predict
re_formula brms::posterior_predict
lme4 merMod re.form lme4::predict.merMod
allow.new.levels lme4::predict.merMod
glmmTMB glmmTMB re.form glmmTMB::predict.glmmTMB
allow.new.levels glmmTMB::predict.glmmTMB
zitype glmmTMB::predict.glmmTMB
mgcv bam exclude mgcv::predict.bam
robustlmm rlmerMod re.form robustlmm::predict.rlmerMod
allow.new.levels robustlmm::predict.rlmerMod
MCMCglmm MCMCglmm ndraws

Examples

mod <- lm(mpg ~ hp + wt, data = mtcars)
plot_predictions(mod, condition = "wt")

mod <- lm(mpg ~ hp * wt * am, data = mtcars)
plot_predictions(mod, condition = c("hp", "wt"))

plot_predictions(mod, condition = list("hp", wt = "threenum"))

plot_predictions(mod, condition = list("hp", wt = range))


[Package marginaleffects version 0.11.1 Index]