autoplot.survfit {ggfortify} | R Documentation |
survival::survfit
Autoplot survival::survfit
## S3 method for class 'survfit' autoplot( object, fun = NULL, surv.geom = "step", surv.colour = NULL, surv.size = NULL, surv.linetype = NULL, surv.alpha = NULL, surv.fill = NULL, surv.shape = NULL, surv.connect = TRUE, conf.int = TRUE, conf.int.colour = "#0000FF", conf.int.linetype = "none", conf.int.fill = "#000000", conf.int.alpha = 0.3, censor = TRUE, censor.colour = NULL, censor.size = 3, censor.alpha = NULL, censor.shape = "+", facets = FALSE, nrow = NULL, ncol = 1, grid = FALSE, strip_swap = FALSE, scales = "free_y", xlim = c(NA, NA), ylim = c(NA, NA), log = "", main = NULL, xlab = NULL, ylab = NULL, asp = NULL, ... )
object |
|
fun |
an arbitrary function defining a transformation of the survival curve |
surv.geom |
geometric string for survival curve. 'step', 'line' or 'point' |
surv.colour |
line colour for survival curve |
surv.size |
point size for survival curve |
surv.linetype |
line type for survival curve |
surv.alpha |
alpha for survival curve |
surv.fill |
fill colour survival curve |
surv.shape |
point shape survival curve |
surv.connect |
logical frag indicates whether connects survival curve to the origin |
conf.int |
Logical flag indicating whether to plot confidence intervals |
conf.int.colour |
line colour for confidence intervals |
conf.int.linetype |
line type for confidence intervals |
conf.int.fill |
fill colour for confidence intervals |
conf.int.alpha |
alpha for confidence intervals |
censor |
Logical flag indicating whether to plot censors |
censor.colour |
colour for censors |
censor.size |
size for censors |
censor.alpha |
alpha for censors |
censor.shape |
shape for censors |
facets |
Logical value to specify use facets |
nrow |
Number of facet/subplot rows |
ncol |
Number of facet/subplot columns |
grid |
Logical flag indicating whether to draw grid |
strip_swap |
swap facet or grid strips |
scales |
Scale value passed to |
xlim |
limits for x axis |
ylim |
limits for y axis |
log |
which variables to log transform ("x", "y", or "xy") |
main |
character vector or expression for plot title |
xlab |
character vector or expression for x axis label |
ylab |
character vector or expression for y axis label |
asp |
the y/x aspect ratio |
... |
other arguments passed to methods |
ggplot
## Not run: if (requireNamespace("survival", quietly = TRUE)) { autoplot(survfit(Surv(time, status) ~ sex, data = lung)) autoplot(survfit(Surv(time, status) ~ sex, data = lung), facets = TRUE) autoplot(survfit(Surv(time, status) ~ 1, data = lung)) autoplot(survfit(Surv(time, status) ~ sex, data=lung), conf.int = FALSE, censor = FALSE) autoplot(survfit(coxph(Surv(time, status) ~ sex, data = lung))) } ## End(Not run)