or_plot {finalfit} | R Documentation |
Produce an odds ratio table and plot from a glm()
or
lme4::glmer()
model.
or_plot( .data, dependent, explanatory, random_effect = NULL, factorlist = NULL, glmfit = NULL, confint_type = NULL, remove_ref = FALSE, breaks = NULL, column_space = c(-0.5, 0, 0.5), dependent_label = NULL, prefix = "", suffix = ": OR (95% CI, p-value)", table_text_size = 4, title_text_size = 13, plot_opts = NULL, table_opts = NULL, ... )
.data |
Data frame. |
dependent |
Character vector of length 1: name of depdendent variable (must have 2 levels). |
explanatory |
Character vector of any length: name(s) of explanatory variables. |
random_effect |
Character vector of length 1, name of random effect variable. |
factorlist |
Option to provide output directly from
|
glmfit |
Option to provide output directly from |
confint_type |
One of |
remove_ref |
Logical. Remove reference level for factors. |
breaks |
Manually specify x-axis breaks in format |
column_space |
Adjust table column spacing. |
dependent_label |
Main label for plot. |
prefix |
Plots are titled by default with the dependent variable. This adds text before that label. |
suffix |
Plots are titled with the dependent variable. This adds text after that label. |
table_text_size |
Alter font size of table text. |
title_text_size |
Alter font size of title text. |
plot_opts |
A list of arguments to be appended to the ggplot call by "+". |
table_opts |
A list of arguments to be appended to the ggplot table call by "+". |
... |
Other parameters. |
Returns a table and plot produced in ggplot2
.
Other finalfit plot functions:
coefficient_plot()
,
ff_plot()
,
hr_plot()
,
surv_plot()
library(finalfit) library(dplyr) library(ggplot2) # OR plot data(colon_s) explanatory = c("age.factor", "sex.factor", "obstruct.factor", "perfor.factor") dependent = "mort_5yr" colon_s %>% or_plot(dependent, explanatory) colon_s %>% or_plot(dependent, explanatory, table_text_size=4, title_text_size=14, plot_opts=list(xlab("OR, 95% CI"), theme(axis.title = element_text(size=12))))